Glyma13g07030 - SoyBase

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Report for Sequence Feature Glyma13g07030

Feature Type:	gene_model
Chromosome:	Gm13
Start:	7218854
stop:	7221048
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g07030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02380	AT	Annotation by Michelle Graham. TAIR10: CONSTANS-like 2 \| chr3:487438-488624 REVERSE LENGTH=347	SoyBase	E_val: 2.00E-118	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1601	KOG	GATA-4/5/6 transcription factors	JGI		ISS
PF00643	PFAM	B-box zinc finger	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_I1LWY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWY2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6R3R2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS-like protein CO1 n=1 Tax=Populus deltoides RepID=Q6R3R2_POPDE	SoyBase	E_val: 3.00E-145	ISS

Proteins Associated with Glyma13g07030

Locus	Gene Symbol	Protein Name
	COL2a	Constans-like 2a

Expression Patterns of Glyma13g07030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g07030

Paralog	Evidence	Comments
Glyma19g05170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g07030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g050300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g07030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g07030

Limit To All Plant Sequences

>Glyma13g07030.1   sequence type=CDS   gene model=Glyma13g07030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCACCGGCACCTGGTCACATGTCTGCGACACGTGCCGGTCAGCGCCATGCGTACTGTACTGCCATGCAGACTCAGCATACCTTTGCTCATCCTGCGATGCTCGTGTCCATGCGGCTAACCGTGTGGCCTCAAGACACGAGCGTGTGTGGGTGTGCGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTATGCAAAGCCGACGCAGCTTCTCTTTGTTCTTCCTGTGATGCTGACATTCACTCAGCAAACCCTCTCGCTAGCCGCCACCACCGCGTGCCCATTCTCCCGATCTCTGGTTCCCTCTTCGGGGAACCAGAGCATGAACGCGTGTACGCGTTCGTGAATGAAGTGGAAGCGGAGGAGGAAGAGGAAGAGGTTTTTGATGAGTATGATGAGGTTGAAGCAGCTTCGTGGTTGTTGCCACATCCTATGAAAAATGATAAAATTGACGAGAATGGTGGTGATAAGGGTTTTTTGTTTGGTGATGAGTATTTCGACAACCTTGTTGATTGTAACTCATGTGGTCACAATAACAACCAGTTTAGCAACGTTTATGATCAGCACCAGCAGAATTACAGCAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCCGCAGCATTTTCAACCGGGTTTGGACTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCGATGGATGTTGGTGTTGTACTCGAATCAACAATAAGTGACATCTCAATGTCCCACTCAAAGTCGCCAATAGGGACAACTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTCACACCAATGGACAGAGAGGCAAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGAAAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGTTTTGCAAAGAGAACCGATGTAGAAGCTGAAGTGGACCAGATGTTCTCCACAACACTATTCACTGAAGTTGGAGGTAGCATTTTTCCCACTTTCTAG

Predicted protein sequences of Glyma13g07030

Limit To All Plant Sequences

>Glyma13g07030.1   sequence type=predicted peptide   gene model=Glyma13g07030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKEGTNNVGGSTGTWSHVCDTCRSAPCVLYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGSLFGEPEHERVYAFVNEVEAEEEEEEVFDEYDEVEAASWLLPHPMKNDKIDENGGDKGFLFGDEYFDNLVDCNSCGHNNNQFSNVYDQHQQNYSNTVPQNYAVVPVQVPQHFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVLESTISDISMSHSKSPIGTTDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLFTEVGGSIFPTF*

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